Scaffold Ga0209107_10075397

Overview

Basic Information

• Taxon OID: 3300027797
• Scaffold ID: Ga0209107_10075397
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1851
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000852	Metagenome / Metatranscriptome	860	Y
F031497	Metagenome / Metatranscriptome	182	Y
F062746	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209107_100753971	F031497	AGGCGG	MKTPETKVAESLVNLMDDHWFNPTMFGRYLAEQPLYTIDRVMEMIVSVISEQAKLYEVHKSRGESSEGLMLANELNECIKAYQEDNNLNNLKLPSRSYTIKKREEVGQYKFGWRSEELDPFN
Ga0209107_100753972	F000852	AGGA	MTTKREYLKQQGITVGVRGRFSGAAKQVLQEAEAKGIKFTAEAPVQKAK
Ga0209107_100753973	F000441	GGAGG	MKMSDDYINDQLSTAQRLLWGGSETENIEAHNIIAKLIKDRVEQTNLI
Ga0209107_100753975	F000263	AGG	MNSEDIGLPPHLQRMVNAGVSGLDIMHGELKNLMLVAEQELADAQAIEDETEEAMDSMDRTRCEGTLDTLAELYALTYQLSFAIGARNEA
Ga0209107_100753977	F062746	N/A	NAVHDAKLFYLRTPSDLMDKEPLRKDLEDAVSFFQGLWAEGYFD