Basic Information | |
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Taxon OID | 3300027797 Open in IMG/M |
Scaffold ID | Ga0209107_10069081 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1952 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, Canada | |||||||
Coordinates | Lat. (o) | 41.77 | Long. (o) | -81.73 | Alt. (m) | Depth (m) | 20 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F061796 | Metagenome | 131 | N |
F066791 | Metagenome | 126 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209107_100690811 | F066791 | N/A | TTSDGTNFSHVFEDLDPGIQNNILPAAAFSWLVPTGQATVQLAKCNFETSGYVLSQTKALRYPPPTGATFSPTYAGDNVGLGAYTFTGSVVKADGTAYTPNGVIKDVRAKVALTGAGTGSLGLYSTEAVYDAPVGATYNGTVDVTQYIQSLSMAVDEDGKSTCTIGAIAKPLIDAGVQKPNVTSDRPVRIALGDGPAVYPAVVTYQDIFRGTLQPPKIEFLDRDTTASWATYVYSGVDRSGDFDLAWLVESYPYDGIQAINAIIDLMLIAGYDANIYYQGDTPNQEMPYTTNVSKGQYTLAPDYGDTVASFLDKIKQEYYATWITGWMPTATGYLYQWLDVNAASTASTMTLYQSISTATTAGVAEELRPQRVIRSLNSYNEEAECTQVTVIGQDPNTGKFIPYTQIDSAAEIAATAPASRPRNWRGRPVCYQYRDPALNTLDAVTAACLMLYTRLTTGRTLIEFDATFLVYNVSNRPVWLGDVIKLMDTDGVGVLGNYRIIAIPQIEFVQENTVGSSTLFNVRRASYRAVYVSAGT |
Ga0209107_100690812 | F061796 | AGGA | MAYIDGTRTSTLTMSHTQNVLIRIWNPFATQPLEPDYDTHYSGFTFGGHLGFSASLAIATSVVAPSPGSAWTWELRANITVNNGHGSSNTSYVVLTSGSETGATTYKDVSQT |
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