NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209107_10032863

Scaffold Ga0209107_10032863


Overview

Basic Information
Taxon OID3300027797 Open in IMG/M
Scaffold IDGa0209107_10032863 Open in IMG/M
Source Dataset NameFreshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2972
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameLake Erie, Canada
CoordinatesLat. (o)41.77Long. (o)-81.73Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007525Metagenome / Metatranscriptome349Y
F016662Metagenome / Metatranscriptome245Y
F043404Metagenome156Y
F070119Metagenome123N
F082675Metagenome / Metatranscriptome113N
F093864Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209107_1003286310F070119GGAGGMNLNSYSSYDFVIPNCLEPGDIIQWEDEIYTVKSFDLLSDGFIIYAVDEMEDDVELLIPD
Ga0209107_100328632F043404AGGAMIDTTNPLLEKLAFEIADLHNCGGIELEQWDTAYEFVKHFYNTEEQVQIVIRSKK
Ga0209107_100328633F016662AGGAGMTYLVATTEVIYSEEALIKMMLATGEYGIHGHPISHEAMVEFVKDQEWQIEHNLFLDKFDVPCQISIKDEDGTDLFFARNKYEILDNYPEV
Ga0209107_100328634F093864AGGMKMYNYNVEFVLEAMVMITSVSFDEPDLSDEFIIEEARQHLINSYKIDPEVLYLQDVIVHEV
Ga0209107_100328637F082675AGGAGMSKQYHWVVVYDEDWGAFMVDAESEFDRDKIMYDKETGRWDFLDPDSEEEAEYYRLEEILAYNMTRLDIPKKV
Ga0209107_100328638F007525AGTAGGMKTYEGVTVEYTQTIPTSKQMPEFYVWQEGYESYATITYLDRVVEIERGGEMHLTIPNLVNGELTDEYGVIVRYSDDLEAAGINDDIQLMQFIKTISNAGFEVYRMNPWWELFAHNDDMGEIYETFYEAIDAGIDYILDDRGWD
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