Scaffold Ga0209107_10021841

Overview

Basic Information

• Taxon OID: 3300027797
• Scaffold ID: Ga0209107_10021841
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3671
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007525	Metagenome / Metatranscriptome	349	Y
F030094	Metagenome / Metatranscriptome	186	Y
F070119	Metagenome	123	N
F072347	Metagenome	121	Y
F093864	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209107_1002184110	F070119	GGAGG	MNLNSYSAFDFVIPNCLEPGDIIEWQEEIYTVKSFDLLSDGFIIYAVDEMEDDVELLIPDNIVLSLMEEQ
Ga0209107_1002184113	F072347	AGGA	MDNRTKAEILVQFTQDEFNSGEYDEFFDYNDLGIPMSIALTQDMIILTNEGEQLLEETWKELCLLFNANPDDEYETIDDLTNK
Ga0209107_100218414	F030094	GGAG	MKLRGIFEGTFESVWSMEIPDEDWNAFHEDHPQFDESDPEEMQDMWNYFKSLGHYDEIDDTVDKDVLMTGIETYGLEVEIN
Ga0209107_100218415	F093864	GGAG	MYNYNVEFVLEAMVMITHVSFDEPDLSDEFIIEEARQNIISYYKIDPEVLYLQDVIVHEV
Ga0209107_100218418	F007525	AGGA	MKTLEGVTVEYTQTIPTSKQMPEFYVWQEGYESYATITYLDRVVEIERGGEMHLTIPNLVNGELTDEYGVIIRYSDDLEAAGINDDIQLMQFIKTISNAGFEVYRMNPWWELFAHNDDMGEIYDTFYEAVDAGIDYILDDKGWD