Scaffold Ga0209107_10015490

Overview

Basic Information

• Taxon OID: 3300027797
• Scaffold ID: Ga0209107_10015490
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4342
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020166	Metagenome / Metatranscriptome	225	Y
F035764	Metagenome / Metatranscriptome	171	Y
F039131	Metagenome / Metatranscriptome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209107_1001549011	F020166	AGG	MSKEPKIMKMDWRPLGYWPVYKDGKLTWEKDPYDRND
Ga0209107_1001549013	F035764	GGA	VIKTALRIGRNGIKQMIDKLISILFKWTGFREALFAEVNMYNSLTRIMKDPKSMEIASAFWEELDGWKGWTVEENKYYFNDIPEHDLMGVMESLEEMTNR
Ga0209107_100154902	F039131	N/A	MSENEIYKLEVYFQRKYTKLIVDQIKNFEFPDDWTPKQVIDYITYKIDRE