NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209107_10007831

Scaffold Ga0209107_10007831


Overview

Basic Information
Taxon OID3300027797 Open in IMG/M
Scaffold IDGa0209107_10007831 Open in IMG/M
Source Dataset NameFreshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5996
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (95.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameLake Erie, Canada
CoordinatesLat. (o)41.77Long. (o)-81.73Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000821Metagenome / Metatranscriptome876Y
F001477Metagenome / Metatranscriptome687Y
F005558Metagenome396Y
F036551Metagenome169Y
F038999Metagenome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0209107_1000783115F036551AGGCGGMETIEQFLNVEARECELCGSDSWRVLHAGDESNCECEGECLRVCDNPLLEDGCDGVAILIKGEGK
Ga0209107_1000783119F038999AGGAMINSKPSKLSFPCTCNGCRNYPTRPAEIWHESQIASKAQGYFFTKDTMKFFNSRIADFKPVGISPRADSLMVIVSNKRDDDPRYYEIVTLCPYGEIGREWTTDSAGEPITNYASLNKARKSARWNCTIAPQLCDCHGCQLDKAGR
Ga0209107_100078314F001477GGAGGMTNVYTIHPPKSELILFYEVTTPEGENEWGGASCMEAIQWLFLAPKGSRLLISAWDSDEEDAHLVGQTIDVTDLIQQAREVGL
Ga0209107_100078316F000821GAGGMNKEYLRAKVDLCLNQAEIDLQQEEIARAIKNLERANSALSRIFNLEEDESE
Ga0209107_100078317F005558GGAGMSESISWSELAELTHATQVERFDWCPCEDSDGVETTYPDCPAREEANE
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