Scaffold Ga0209107_10006730

Overview

Basic Information

• Taxon OID: 3300027797
• Scaffold ID: Ga0209107_10006730
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6456
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (15.38%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053753	Metagenome / Metatranscriptome	140	Y
F076869	Metagenome / Metatranscriptome	117	N
F083778	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209107_100067301	F083778	AGG	MKKIDMGKYLLLIGKDATEIFDYYNVKEMHGLNRADAQAEEVDMTTPKDGDQGNGVYIYGLTNYDPADKKLTAKDPYKPFLFINLGTFKNYSIT
Ga0209107_1000673012	F053753	N/A	MNHQLKFGYSQLGTNILVKINCKINKEQAIELEKKYPEICIMQTRKGYRIEGSFNTRQNNIYVYEKFEDFKLSLALNLNDFKINKLIDANQALLNQANLELSVADLDLPF
Ga0209107_100067309	F076869	N/A	MITTFMINEITKLISSAQKQNVKLSQEYVDALYNLNINDIIMLRNSYESEKILS