Scaffold Ga0209107_10004500

Overview

Basic Information

• Taxon OID: 3300027797
• Scaffold ID: Ga0209107_10004500
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7786
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (11.76%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007025	Metagenome / Metatranscriptome	359	Y
F013505	Metagenome / Metatranscriptome	270	Y
F065739	Metagenome / Metatranscriptome	127	Y
F100420	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209107_100045001	F100420	N/A	MEPSFNEFSKVVTKYVLGSQERFNELKERMEMCEHATSKAGAAALGYLIAMEEKEAESRNIYDVVLKQVENDGEDSCIRTEAIFAAIYKWLDGKFDGESYPRDGGTRETLREAFDIYMVL
Ga0209107_1000450010	F007025	GAGG	MIVIDFFTEACCKGTELIEGWYWYKDDGDDVGGPFENEEEARLAAKNGITWSNAN
Ga0209107_1000450016	F013505	N/A	MSRTIEDHRESSHLAKIEADRQAQHSGYGVRKFHAVGGIIKWEAYGWERITELTTHYTSYALFDHKWEAEQYFNNIING
Ga0209107_1000450017	F065739	N/A	MTRINHRVEQLTTADTYTAFNGLNTISLTVTVPAWHEPFPIQVRMGAANPRKLEINGLLHVCKTWYLNGPVADQWTISTLNGPIQVPAGTVIETEELPEKWEALTREASKGKQEWFAYSNGRTAFC