Basic Information | |
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Taxon OID | 3300027797 Open in IMG/M |
Scaffold ID | Ga0209107_10004086 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8108 |
Total Scaffold Genes | 20 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (25.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, Canada | |||||||
Coordinates | Lat. (o) | 41.77 | Long. (o) | -81.73 | Alt. (m) | Depth (m) | 20 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F012345 | Metagenome | 281 | Y |
F029371 | Metagenome / Metatranscriptome | 188 | Y |
F059779 | Metagenome / Metatranscriptome | 133 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209107_1000408613 | F029371 | N/A | MKREKKLIALAAFLPVLADFIEDLNDQSVFRQGLKNKANMLADEIQKTDRLVLRIDEQHAEQVFNEQVDLQRAFRVWIDESIKI |
Ga0209107_1000408614 | F059779 | N/A | MDIGLQKIKIGVNLWTIKKRIQNARENILKTRPEAIEYIKGAEQSEEELLEAIAFLTNLYEHAVSLSRENTILANRNMELSRQKHELENQIKYNQIENQL |
Ga0209107_1000408618 | F012345 | AGAAG | MRFKLTYQVGLAVVQEWIFTSKSLAYWKKMDLLESGRFNDGKFKVTPQ |
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