Scaffold Ga0209107_10001751

Overview

Basic Information

• Taxon OID: 3300027797
• Scaffold ID: Ga0209107_10001751
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12150
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (77.78%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000722	Metagenome / Metatranscriptome	922	Y
F011919	Metagenome	285	N
F014971	Metagenome	258	Y
F023058	Metagenome	211	N
F027510	Metagenome	194	N
F027779	Metagenome	193	Y
F047052	Metagenome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209107_1000175111	F014971	AGG	MTYEEAVAMYPHDEVHIQIDGVVRPMTPAEYEAFIELQVDYVPFP
Ga0209107_1000175112	F027510	N/A	MTVNNLPKFVILLVGLLCLTALMIADKIDMQSGVPMLTMILGYAIGNGVNAKQGNESSNVFRSKPKK
Ga0209107_1000175113	F027779	AGG	VIPANPKIPNSRPYTGNADGASDGPRQGMDEWIRQAIRYSDGAFYNFGSWGIRNMRGSDNLSVHACGRAVDLSFLATEKHPAANRKGMVAFLNIVTANANALGLECVLDYLPKPFGRGWQCTRQRWSKYSKPTIHGAPGGTWCHFEISPAMADSPILVKQAFQRVFAEIPQ
Ga0209107_1000175115	F000722	GGA	VTEEPYPEIGITEETRQMYPENYSDKYNKVFKEFIDDIVRPNHSARPIDRLEDHSILLDELTLMYDAHMTIGGEQNRFNASVIRAAINVIRSCSK
Ga0209107_1000175116	F011919	N/A	MSDLQLFAPTRGLGAYREECAIDRNTVIISSSAKPTSVIAALQALPKSGSKRRRVYDYLKQTGGATDEEIERALGISGNTVRPTRGSLVKDKFVYATELERPTISGNMAIVWKAR
Ga0209107_100017516	F047052	AGGA	MKIKLTLTRGDKKETLITNLFAIAEWERLENRRVSDGRGIGASDMACWAYIMLGIKGETLPATWREWLKANPDVEIGVEDATDVNPTDAATGDNSLNL
Ga0209107_100017519	F023058	N/A	MAGVAVIGSGNYDLEIDTGYMWDAFTLDDPLKGELDNTEYVLTGVSQYATVMDGTIGLTAKRGRQNTGDQFAYGTMSFTLNDTYADGVFNPFDTTSPYYDPANDQPGLAPLRQVRFSRYDSLNVKKYLWVGYIVNYDYTFTLGGLDTVTVNCADFSYQLGQTFLAEWNVTEELSSTRFSSLLDLPEVSYSGARSIETGVATLGGAAAWTVANGTSVAAYANKINEAEQGRIFVDREGTITFQKRLGTTLGVPVAEFHDDDTNIGYSAIDISFQADTVVNRASIQHAGATSPQVAEDLVSQAAYLVQTQSITDSLLHNDAAALTLAEYLITANPEARFNFLGTEFPGLSTADQETLALLDVGDLINIQKSITTSAGPTQFAQDLTIEGLEHRLTLSAGHAVTYYTAPTTIVYELILDDIVYGTLDEENVLG