Scaffold Ga0209107_10001697

Overview

Basic Information

• Taxon OID: 3300027797
• Scaffold ID: Ga0209107_10001697
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12319
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (70.27%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015601	Metagenome / Metatranscriptome	253	Y
F024558	Metagenome / Metatranscriptome	205	Y
F039639	Metagenome / Metatranscriptome	163	Y
F039640	Metagenome / Metatranscriptome	163	Y
F061859	Metagenome / Metatranscriptome	131	Y
F065787	Metagenome / Metatranscriptome	127	Y
F066790	Metagenome / Metatranscriptome	126	N
F081346	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209107_1000169712	F015601	GGAG	MAGYTKEFLVDAFMSRYLGCDHLSIEKLERLEIMANDLYDRVGRDQFRVYACLDAEAIREYKTKVTA
Ga0209107_1000169721	F065787	GGAGG	MKKLEYYEIRQTCKLVDYDLKLAGRGKLWVEVYRDEKYEYRALFPDVADWSAVPMTILTHPIHETQTDLS
Ga0209107_1000169724	F024558	GGA	LDIKEKTMIVILYTEDFEPIIPIDLPLWLLERLEIEGAVRVAVNRPKGFKGEKIPVGTVGNENMPTVRIHYEKLRWRDGSLKTILVTPDEELALTLNPDWLPGQRAPIYSYLGVMRKMHDELIKQIRKNQD
Ga0209107_1000169726	F039639	AGGTGG	MNIDREFIKWFYEDAYPEAGSNRRQVYSTTQNSQNINVIDYWMREAFKAGAVAATNNYEVNALEQFEAFNINRNYPL
Ga0209107_1000169729	F061859	AGGAG	MTIEALLVVIALCLFCIYFVFEYQKAATPPYQEPLEPLKPEADMVDQWKAATKADTLDNIDNWNAKVGDKIWHKEAAAELEPTPINPQAAWPFPRGPKP
Ga0209107_1000169730	F081346	GAGG	MMSTLLQLIKAAKPDPNKPITHINPPTVVPTRVMPHKPGYNEIVTVPETEANPDKPKKPKKPRK
Ga0209107_1000169736	F039640	AGGAG	MNIPDLLNQSTRKDGTVDLLQYTNLVLSEACWLIKETPITAAFTTFDAAVAETQRADCFKQVYNLIIENIADAKPT
Ga0209107_100016975	F066790	N/A	MQRVRDMFKPYTLEDFISESDPKDYKDIQRLEAVWQNYQERKLFNNCY