Scaffold Ga0209107_10001572

Overview

Basic Information

• Taxon OID: 3300027797
• Scaffold ID: Ga0209107_10001572
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12793
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (70.59%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001781	Metagenome / Metatranscriptome	635	Y
F004840	Metagenome / Metatranscriptome	421	Y
F013527	Metagenome / Metatranscriptome	270	Y
F023344	Metagenome / Metatranscriptome	210	Y
F099311	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209107_1000157215	F023344	N/A	MTQTIEPFTDTVGEHILGAIQEDIEQELFEQWNDNNLDEGSEYAEWRFMSYAPDTLKQSYNEYYGYKEEDEFYL
Ga0209107_1000157222	F001781	AGGAG	MKPEDKDKLNECLDILDSTDLGLSLVWLWTWSTINNILDDPEWKATVTQDDMWLYLCDAVSNGQGFSLEYGVEQHEEDVLEWMANRGYISDPSNDDDQD
Ga0209107_1000157225	F099311	AGGAG	MAKKAKAKTVPYLETWDTRYGKSQRIVLRKNGKFVDNTSLSALKQGARVTSR
Ga0209107_100015723	F004840	AGAAGG	MYKITVAYDSNAPHWQKDYPDEMKAWQAFFQFTDWGTANEYSTVNIYTPELVCYTKVFYREGRRVVTK
Ga0209107_100015724	F013527	GGTGG	MARFEFNTFIDVEAENYDEAIDVFQFQLKYGIDKDNVYVADIKELTIYNNEGVEV