NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209107_10000990

Scaffold Ga0209107_10000990


Overview

Basic Information
Taxon OID3300027797 Open in IMG/M
Scaffold IDGa0209107_10000990 Open in IMG/M
Source Dataset NameFreshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16071
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (14.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameLake Erie, Canada
CoordinatesLat. (o)41.77Long. (o)-81.73Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004366Metagenome / Metatranscriptome441Y
F013186Metagenome / Metatranscriptome273N
F019139Metagenome / Metatranscriptome231Y
F038670Metagenome165N

Sequences

Protein IDFamilyRBSSequence
Ga0209107_1000099010F019139N/AMKTKNEHLGTYITTYNGNYETTIEVTEKMAKDHKYYTSIGLGYLFEESTPKAKYKGVENEKAD
Ga0209107_1000099016F004366N/AMNSLQAITNHIIAFYTAHKQVFKVGSDFKEQLYNFATQNEKYPLVYIVPSGVIPTENTTEFTFDIYCYDIIQKDRANIITILSDTQQILNDLYIYYMDSTDYSFDVVGTPTFSPLNNDLLDYAAGYQMSITLTVNDWTDCAVPI
Ga0209107_1000099020F038670N/AMITILGREIPNRLDELTIEQFENITELSNNKEIDPIDRHLQIFASLGIPEKEFFDYDVADFIDLVKEFNSSPKIEYPTIETLEVEGYNYTAKMKLTVRDTKLIEKIAINKPKGYVSEIAAIMFKRDDLTPAEHYADAHIKHKANLFKKLTADIAIPYLMFIATKINHQVDAGSDTPTDSPAEAVE
Ga0209107_100009908F013186GAGMRVDSLENAFVHQLGGGYGPRTLCNGMKKALDQYISSNYAEVRAYTSYFLSKMGSYIDADTVINNSYLHVVNIDGDPDKVKGYLLNTIKYQILWSTSKSHRDDKITAIEHPNTEPVDDDDLVHKLREDKAYSFNKGLIEIYRNEITDKIQLIVFEAYIDKGYITSRAMAVYFGITHTSAYYLIKELKQNINKLQYRYETEPSY
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