Scaffold Ga0209107_10000953

Overview

Basic Information

• Taxon OID: 3300027797
• Scaffold ID: Ga0209107_10000953
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16422
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (69.44%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006506	Metagenome / Metatranscriptome	371	Y
F008554	Metagenome	331	Y
F010472	Metagenome	303	Y
F023573	Metagenome	209	Y
F034176	Metagenome / Metatranscriptome	175	Y
F048781	Metagenome / Metatranscriptome	147	Y
F073563	Metagenome / Metatranscriptome	120	Y
F093145	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209107_1000095323	F093145	GAGG	MDEDKDLIAFITDLDMVIAEHQDKYPPHSIAGILLSRVTLLMINDPVVGKELLKFVWNKLDELEQSNPGQYL
Ga0209107_1000095328	F073563	AGGAG	MNPKHLYTVRWTQPYATYQMRPYLRQLRNDYEQLIEAQLERKQWPEAQQVIKRIMKL
Ga0209107_1000095329	F048781	N/A	MSGWNTIQRLRHIEEEIDKIGFKFAKSKHGDWTDDHGALSLVPKDAEALPLYSRDAELFVGSLERLEDWLAGVKWARDYDMMCRISTDEKRSEAEQKVRNRQLMRTLKEGKRVEGVEE
Ga0209107_1000095332	F008554	GGAG	MNIQDEMIEFKAKQLSDEIDREVLWGMLEGIGWHRVMLPRLTDNNHAVDIAHWLALNCKNSHERSGRDFLFESARDADWFVLRWGTT
Ga0209107_1000095333	F034176	AGGTGG	MKHNYVKHRDNVGDLEYFISKFECRVEDSRVYNQYVRPAPYYRDFCGSDSFQTETKILPMKAIHLTSVNLARLVEEQEHLQRLTDDREYSKKIWADASRDQMVRDKNPAVEKAYQKYQMLLELARK
Ga0209107_100009534	F023573	GAG	MAMLTLLTTTGEYNATVTIQGPCGVILIRDLVWMPLDRQDLLEICYWESWAVLQGAYHCCFSIPGKVALLPPN
Ga0209107_100009536	F010472	GGAG	MSALAELMNSGNTWAAERAQYALQVHEAVGAGQLSPSEAKEILQDLISTDKLEEAAADQQATAALVYGVTQLISLY
Ga0209107_100009537	F006506	AGGA	MKRLLAACAFFALTGCASIMEYIPSSWDVNQAKSITDIQQQVRHFDCKADLKPQVDQLAKNVEWFDIYSQTKPTRDINKLTGTITDTVKELQERVAKGPVSPLYCDLKKKIIQQQADILAKSVQGRF