Scaffold Ga0209107

Basic Information
Taxon OID	3300027797 Open in IMG/M
Scaffold ID	Ga0209107_10000879 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027797 Open in IMG/M

Scaffold ID

Ga0209107_10000879 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	17091
Total Scaffold Genes	51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	38 (74.51%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

17091

Total Scaffold Genes

51 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

38 (74.51%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Lake Erie, Canada
Coordinates	Lat. (^o)	41.77	Long. (^o)	-81.73	Alt. (m)	Depth (m)	20
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, Canada

Coordinates

Lat. (^o)

41.77

Long. (^o)

-81.73

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001781	Metagenome / Metatranscriptome	635	Y
F002515	Metagenome / Metatranscriptome	552	Y
F004840	Metagenome / Metatranscriptome	421	Y
F006385	Metagenome / Metatranscriptome	374	Y
F017133	Metagenome / Metatranscriptome	242	Y
F021288	Metagenome / Metatranscriptome	219	Y
F051126	Metagenome / Metatranscriptome	144	Y
F071231	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209107_1000087911	F021288	GGTGG	MLGYTKEDLDNMIYGVGSADLLINTDENPAIHNYLVTAHEFLQGLWAEGYFD
Ga0209107_1000087922	F004840	AGAAGG	MYKITVAYDSNAPHWQHDYSDEMKAWQAFFQFTDWGTANEYSTVNIYTPELVCYTKVFYREGRKVVTK
Ga0209107_1000087926	F002515	N/A	MSTKKTAEDLRRLMELRRSNAATPIKSKKVYSRKDKCQSDMLELKNNNKGE
Ga0209107_1000087927	F006385	GGAG	MILDNGTLIAIVIALAGSLTMMIAFWQRNIQLEKEIRRLQVALRSERLK
Ga0209107_1000087928	F071231	AGGTGG	MMTRKDYVATAEILSNYFATSVFDEQGEILFADLVDEFSLMFETDNERFDANRFAIACYKELEMAK
Ga0209107_1000087931	F051126	AGG	MSAKPYSIEDLLIGKTYRSHNRHDEGVIQYATPRPDVWYGSEFEAYAIEVSPTRGIKNFWATVAVKVGA
Ga0209107_1000087938	F017133	N/A	MSIWTKFATVSDYPKGLMNLCPCGQVVLAPAQYHEGFPWWNNPDKCKELWAISQKEISDTLSK
Ga0209107_100008795	F001781	GAGG	MKPDDKDKLNQCLDILDTTDLGLSLVWLWTWSTIKNILDDETWHPVVTEDQMWNHLCEAVATGNGFSLEWGAEEHQENVIEWMLNREFISDTLVDDEDDD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209107_10000879

Overview

Ecosystem & Geography

Associated Families

Sequences