Scaffold Ga0209107_10000849

Overview

Basic Information

• Taxon OID: 3300027797
• Scaffold ID: Ga0209107_10000849
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17357
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (78.12%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002934	Metagenome / Metatranscriptome	519	Y
F013181	Metagenome	273	Y
F045099	Metagenome / Metatranscriptome	153	N
F059951	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209107_1000084918	F013181	AGGA	MSGLQFLNQDGEWEKFPSDDELATTAHRKELLNALQVRILCHLCNEPVPKEELAFWVEGQSLTWSCKKCHTISESKP
Ga0209107_1000084926	F059951	N/A	MTTQDYAALAVAIVTVLGGVTAMLNFMVKHYLAELKPNSGSSMKDAVNRLETRVDKIYEMLCDKSQ
Ga0209107_1000084927	F002934	AGGAG	MNMKHPAIISVGAFLAVWGTTSNFSLDYRAILGSIVAGIFGYATPKK
Ga0209107_100008496	F045099	AGG	MAQLKITFTDGKELSGEITPLMEYLFEQHYKIGFHKAFREQEMQSMVYWLSHEIVKRSGEPVDAKLENFIATLKSVEVLDSDPLQ