Scaffold Ga0209107_10000796

Overview

Basic Information

• Taxon OID: 3300027797
• Scaffold ID: Ga0209107_10000796
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17926
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (7.69%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005814	Metagenome	389	Y
F006463	Metagenome / Metatranscriptome	372	N
F009958	Metagenome / Metatranscriptome	310	Y
F014573	Metagenome / Metatranscriptome	262	N
F019965	Metagenome	226	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209107_1000079611	F014573	N/A	MSHNTKCSIQTMIYLFDMHIQDEQLRMEVQKLLAFKKRNNIVKEIQSKGVTFHFFQLTNFLEGRDVSLSTLKKIDYYVNK
Ga0209107_1000079622	F005814	N/A	MELELLSSRINLNHTCLKLQVSIDEIKAKNPHRNDLITSMEQTMHEIKKAIFIYQTLEKEFRSTRQINFDLQHLNLELKQEVKDLKKIIEFNNAEL
Ga0209107_1000079627	F006463	N/A	MKAGTIYDQMDWWQRQWRGSFDLYLYLEICRIKKNENQIQKPMKRFKATFKTWAYVGAPMKLETRIVEAYDTQHVKNLIQKNDDIIMEIKQIEQ
Ga0209107_1000079628	F009958	N/A	MENRNLGVWNRGWELLYEFAGWQFSIAGTWEFNDWDEVSEYAFIELDVEVSEKWIIETDDNLQPHVLGVRLLEDLRLEMQEIINSDLANYNFWEWKTSNDDSNYTFYHEL
Ga0209107_100007965	F019965	GGA	MNNLQVMMEAVQIYIYQKKGVKIRIYLRDIRDINLLKQAYDYIQQNQHNKNTNN