Scaffold Ga0209107_10000628

Overview

Basic Information

• Taxon OID: 3300027797
• Scaffold ID: Ga0209107_10000628
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20417
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (56.90%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Associated Families: 13

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004133	Metagenome / Metatranscriptome	451	Y
F015601	Metagenome / Metatranscriptome	253	Y
F024558	Metagenome / Metatranscriptome	205	Y
F033434	Metagenome / Metatranscriptome	177	Y
F035768	Metagenome / Metatranscriptome	171	Y
F038245	Metagenome / Metatranscriptome	166	Y
F039639	Metagenome / Metatranscriptome	163	Y
F045760	Metagenome / Metatranscriptome	152	N
F054039	Metagenome / Metatranscriptome	140	N
F061859	Metagenome / Metatranscriptome	131	Y
F062765	Metagenome / Metatranscriptome	130	Y
F066790	Metagenome / Metatranscriptome	126	N
F078723	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209107_1000062810	F038245	AGGA	MKIYFGDANEDLFSDGLFLVNDKQYYYGVQHGTNPGGLDEVVIFDGCKRKVPLHIEAIPELIAALKEVQRVNEAVKEANRLTERAESKTKGYVYSSWNDDFEVDFDTE
Ga0209107_1000062823	F066790	AGAAG	MDLLKMLSNLMQRLQDMLKPYTLDDFMEDAQPVDHKDIQRLEAVWNNYQQRKLFNSCY
Ga0209107_1000062829	F015601	GGAG	MAGYTKEFLIDAFMSRYINCDHLPIEKLERLEIMANDLYDRVGRDQFRVYACLDAEAIREYKTKVAA
Ga0209107_1000062832	F054039	GAG	MIDISPNYKRLAKVLNKTRKSLTQTCHELGIDVDDIEDHILIEVIDQCSHCNIWSQQLVKDLDYNPVCPTCVRLTGL
Ga0209107_1000062835	F078723	N/A	MSYDILINSLVNGESVTVTKSDGTVYQEPRPPNRTALAAAKALQNLQNQLNFGTSAINQLTRERNELMDSITRLQEQNKRLQDEINTKTSTTTSADGNSDSPSTG
Ga0209107_1000062841	F024558	AGGA	MIVILYTEDFEPIIPIDLPLWLLDRLEKEGGVRVAVNKPSGFTEEQIPVGNLECEAPTVRIRYEKLRWRDDTLKTILVTPDEELALTLNPEWLPGQRAPLQTYVAAMRKLHEQLIKQIRKNQD
Ga0209107_1000062844	F039639	AGGAG	MNIDREFVKWFYEDAYPQQGSNRRQVYSTTENSQNINVIDYWMREAFKAGAEAATHGYEVNALEQFEAFNINRNYPL
Ga0209107_1000062846	F061859	GGA	MTIEIALIILGLALAACYVVLEYQKLAKPPYQEPVKPDMVEQWKAATKADTLDNIDNWNAKVGDKIWHKEAVAELEPTPINPQAAWPFPHTKP
Ga0209107_1000062848	F035768	GGAG	MKITIEDRLLAAYQAQRLRLRDREDEDYRAKVEAEVFQKIIVDRVRRNLRLDLDKGTNVDLDV
Ga0209107_1000062850	F062765	GGA	MEWYRTRGLTQKQTKTATKDTMFYNIGDTYTTEDVSVSYSCGRIDVRGIPNEPYGDEIGVPPMLSTDWHAFGNWLWDVQTMSIWTLKDLITAYEQTHNKITWDTHE
Ga0209107_1000062856	F033434	N/A	MLFRKQEIHSLDFTGCEGLDLQGWETWCESMQLSHLHQWLLPQLVAWYGSWTLVLDDKSNYDCLATVKRNCPDPKSRAFYMLSRVKRSLLVPQQTKTPDYASLTPLILMGLKRMQGINYETFRGSSGLQYLLEPRLLDAIVLPSTDLEVVDGLGSNRLLEIQKQGLTTKSGKTAGSMKPARSTWSLTGIQDTEIGHLPKLTQTILTQCWLAHPELRTPYMILDLQNWDNMPQPLVTNDIFKAVQPKQELAGVLPWDL
Ga0209107_1000062857	F004133	GGA	MKYTKEITDKLIAEYKSGVSVALIAHNLEVPERSVIAKLSSLGVYTKKSYVNKRGETPVKKSEHIERIAELLDVNEELLESLEKVNKTVLKLIENKLSQTATESDLLEVN
Ga0209107_100006289	F045760	GGAG	MASSGSKAKQTYAALYKSSTRWATNRKIKLTRVLKQQPNNEQIKDALANIKYRRHTPTTKTVWSHSNIRIAKLFKEFTGRASADLFSSNPKVQFAALMYRPDFDKLGVIEGRVNFSLGARAHDAKGNFIWK