Scaffold Ga0209107_10000271

Overview

Basic Information

• Taxon OID: 3300027797
• Scaffold ID: Ga0209107_10000271
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31670
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (71.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002977	Metagenome / Metatranscriptome	516	Y
F003080	Metagenome / Metatranscriptome	508	Y
F011665	Metagenome / Metatranscriptome	288	Y
F018716	Metagenome / Metatranscriptome	233	Y
F026556	Metagenome / Metatranscriptome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209107_1000027123	F011665	AGG	MQNPINLSPITQFAQIVRSAELSQSKEVKIPIQQARLMNLALIELMDQLHQDYETMYNALKRGVTEEPISVSMDGGGFSNK
Ga0209107_1000027128	F002977	GGAG	MTPEIPAEGILKQNSWGDSKTYRVVCECSSNDCDHNVWVEAEDTGITVTIYTTTRTNFWSKTRWYHIWTLLTKGYIDTEANLIMKKQVALNYATVLQSAIDDVERFRERYEQNKNS
Ga0209107_1000027129	F003080	AGG	MTTAKDLTDQLINRAKHLKEFVVERDIHHIPRGVIKFNVQHTTGEPARIFVPALTQQEAESMVDEWFGEEA
Ga0209107_1000027133	F018716	AGGA	MTDTTVTVVWDNQNGFWWNETCAMVLEVFGLPGERYATHPKHDAMYFNFKNQKDADLCRILLSERL
Ga0209107_1000027136	F026556	GGAGG	MTSALIKLVFGITLVVIAVAIGPLLGIWSLNTLFPSLNIPFTFETWAAFALLLGGASGIRYRK