Scaffold Ga0209107

Basic Information
Taxon OID	3300027797 Open in IMG/M
Scaffold ID	Ga0209107_10000143 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027797 Open in IMG/M

Scaffold ID

Ga0209107_10000143 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	41587
Total Scaffold Genes	82 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	62 (75.61%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

41587

Total Scaffold Genes

82 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

62 (75.61%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Lake Erie, Canada
Coordinates	Lat. (^o)	41.77	Long. (^o)	-81.73	Alt. (m)	Depth (m)	20
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Erie, Canada

Coordinates

Lat. (^o)

41.77

Long. (^o)

-81.73

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000369	Metagenome / Metatranscriptome	1222	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F000868	Metagenome / Metatranscriptome	853	Y
F001280	Metagenome / Metatranscriptome	732	Y
F003422	Metagenome / Metatranscriptome	487	Y
F077310	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209107_1000014315	F000369	AGAAG	MTEIEPSVHFDKMNKVVSELLKGSSATQIATITGMTRKDVLGYIDEWKAVVHNDTNVRDRAREALMGADQHYDMLIKEAWKTVEDADTQGQLNVKSGTLKLIADIEAKRIGMLQAVGVLENNEMASQILENERKQEMLVGILKEVTSNCNHCKIEVAKRLSQITGIVEPIIISQEASDA
Ga0209107_1000014318	F000376	GGAG	MSEYQERAKECKCCTKHVPLPTILKLYNEIVLCPTTYYNVIEYKRIWGSYGSRPPGNIRKHFSEYVQSIVEEKNKVGE
Ga0209107_1000014341	F077310	AGG	MSIDANSVIIVIAASILSGIGTALVNGIKESKREKIRQSEREQDLLKMDLKDLEIKLYKLEKDLAEWRDKYYEALQELIEVKAELEDTLIKLTHIAMHE
Ga0209107_1000014353	F001280	GGCGG	MCIECGCESVGSESGIIPVIVTDVSRDGEAGLTLSMTSTPEQTRQFINE
Ga0209107_1000014374	F000868	AGGTGG	MSFLENENQMVIDATYSEIGEMLVEDWVNANLDEGQLFADYRFAEMSDSNYLKGRFNLFYDLNKGDQYYLEYEEE
Ga0209107_1000014380	F003422	AGG	MYICRQCPQGCGCDIDHTGRIKNPLEKLVNVSGSWYNSSMTNELISSKYTFVCDPDECDCLIELTSSDGFGFPSGVTQLTCPCGRKTTLVSVEHATIQPTTQTKEEPMETETPAVTVPDTYNANLLVTYKVIHGYSDATYETDKVASIEWSLHNGRQSQKQVNMYVSKIDTVKDIITEAYADSDDQETLRSIAEALDIELTRDVEWSATIEVSGTIQLDLLADSDTDVEQEIYDNLYVDSQNGNIEIVDTEVCNVREN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209107_10000143

Overview

Ecosystem & Geography

Associated Families

Sequences