Scaffold Ga0209107_10000058

Overview

Basic Information

• Taxon OID: 3300027797
• Scaffold ID: Ga0209107_10000058
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 67380
• Total Scaffold Genes: 80
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 62 (77.50%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F000980	Metagenome / Metatranscriptome	814	Y
F011299	Metagenome / Metatranscriptome	292	Y
F015208	Metagenome / Metatranscriptome	256	Y
F030095	Metagenome / Metatranscriptome	186	N
F103268	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209107_1000005812	F011299	N/A	MTRKHFEATAEILKFASDKTHPAVFSKMVNDFALMFAKENPNFNVNKFHEACGYSVPNLSSR
Ga0209107_1000005813	F015208	GGA	MYKITVANDSEPLHFIKEYSDELEAHTEFAKFIDWGFADEYSTVNLYTPSGKCYTKVFYRTGMVSVK
Ga0209107_1000005815	F000447	AGG	MGYIEFARINEEGVSWVDLAEATPDELFNIEIGLLNEGAFE
Ga0209107_1000005832	F030095	AGG	MAAQKNFQVDENTTFTFEVQYLDEENAPIQLNHHTAKMQVRDTQGGKKLAFTLTEQDGIVIIPSLGKLSVSLSPERTKKLFYPKSAYDLVIIDPSINITRLLEGYLTLNRAVTI
Ga0209107_100000584	F000980	N/A	MTKYQKYTWICTSDCDALIEYTFKDGYGWPNGVMDLTCRCGTSCTLLSVEDATIPYTDTPLPTKEEQMEEATIGSDATHSPAVEYNPNQLVTYKIIHGYSDPEYATTKVASIEWDLHNARQTQKTNNSLTNKISLVKDIITEAYADSDDQETLRSIAEALDIELTRTVEWSATIEVSGTIELDLLADSDTDVESEIYDNLYVESQHGNIQVDDTEVTNVREN
Ga0209107_1000005859	F103268	GGAGG	MTDYSIDAMYEVRKHLWSQLVLNNIIDPNDYYSDNLGETIIPIIPVQQSPEMNQFLSGKTHIVYDKMGSTYEENWMICCEKISFTIYSVDFAEINIIRNMMIDVFRRMDESARDLNKSKSTSKIIFHNTMILEMSPTEPSTELAGFLAADVILEVKYSRTVGPKGRFD