Scaffold Ga0209107_10000056

Overview

Basic Information

• Taxon OID: 3300027797
• Scaffold ID: Ga0209107_10000056
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 68229
• Total Scaffold Genes: 97
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 83 (85.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003439	Metagenome / Metatranscriptome	486	Y
F021093	Metagenome / Metatranscriptome	220	Y
F062705	Metagenome / Metatranscriptome	130	Y
F070899	Metagenome / Metatranscriptome	122	Y
F099186	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209107_1000005640	F021093	AGGAGG	MGNPFIIAEDLALKTHLSGLTVSDEKSASRQVKLWFGYPDVEVRAQEFPFVTIDLIDIMPSNERQTSGFTYDGDYNGTIAINSDGAYGYEIPIAYDLIYQITSYARHPRHDRAIMFQLLNKFPSKFGKLPVPNQLGTEIGYRSMFLDGFVKRDAVEGETGNRRLLRNVLSVRVISEMSPDLALSRTPYVEEVSLDTTSTPPSGYTLV
Ga0209107_1000005655	F062705	GGA	MREQNVSQPTNRLVQVFLSQAQIPGPGIFEVSANDVGALRCTCPGYNARKSCKHTKFVQTRIDKNNGSYPLEISSRATKEDALKAKGSNDEFRDFVIRFGKIEVY
Ga0209107_1000005681	F099186	GGA	MANGANLYSGGVYGHKPWDKDRAGVITPEEAAFPPQAYIGPFASNQERLLSQSLAAFTMSAAEIQEYVRPPLPQIKLFPARYGFTENEIGIEDIIDLPRTAPTAQRVESDFSNTPNSTQSSSRNTLGGSV
Ga0209107_1000005683	F070899	AGGA	MSNDPGLFTDATGDGMAGAMDVALETQREMPTVYNGSTSCKGCGMMLNPVQSLHTDLCSSCNRRKLSKLVKGRMA
Ga0209107_1000005684	F003439	AGG	MTVNKFRSESASLIEGSTDGKYRKRRPNTEVAPGMGDQLVVKNRAGLHPYMNYGFINSEETAKVSPGAN