Scaffold Ga0209107_10000024

Overview

Basic Information

• Taxon OID: 3300027797
• Scaffold ID: Ga0209107_10000024
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 91616
• Total Scaffold Genes: 82
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 59 (71.95%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001360	Metagenome / Metatranscriptome	714	Y
F007312	Metagenome / Metatranscriptome	353	Y
F012571	Metagenome	279	Y
F097447	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209107_1000002421	F012571	GGAGG	MEENNEEDEVIGVCSECKSDQPEKYMYNSPFAQEGKSVPCKFCGGVVIITYRQTRNRALDGSDKSRGI
Ga0209107_1000002446	F007312	AGGAG	MATFYVGPRPVLKGRTTAGMVNPLTSMTGKAKGTGTYSFYPLYSTSHVLDGAPDNHFDPGTGQFPGNRFMSQIFNGSTLYVHPLSGTFPDGSATYDGARFKPNEYKGLAGASAFPSTFGHAYNRVNDYALYDNNIFDGVPSADIFANTGHAQRTDAAGAAASFGFFQPTQFNGVTSTVIFTSGYGQANTTGDYGREKVQEFNGVPSAKAL
Ga0209107_1000002469	F097447	GGAGG	MGIPGVKTLIRDRFYSVSRQDAPAGPRIVAIAKRSTPNLTGGVADLDVVRVSNEADVISAFGDGSDAHRAFLELLIAGAGRMYIVPLPSNTVFVPSTGAVTSLSSDATPVSVDIFDDAFIAAESCIPDIIVPWGRGGHPYTWDLTGATPNTSTTAPAVGFYADNSATVAYNWAYKVSAKVKDISENINPCIAIMGVNPYAGTSETMTPGNVNTHLALTSLPVRNNSDLLKETGPYVVVVATEIKPVNYSSGSVDFGYANGATHMAATISILPSYSSVVNKAAYNVEAIRYSPTRTQQTALSDKGVNSVVVNFNKIPVFGDGLTFSWSTSDYTRLSTKRIINDATSVVRQACQRFVGEPSNIQTRNAMETAITSGLRGMQIVGALLGSDFTVSYIPNENKAVVDLILTPAFELKEIEVRVAISL
Ga0209107_1000002481	F001360	AGGAG	MSLAKFRKVHSKTGAGRFVVSEGIAPAAYLLPHPGLPTWYNDSEDDRFEIVVTKGTILSVVADANGDARIVPANGTASSQSWGDVMPSWDPLDGATPSSTSGSTDTISVGAYSVPIGCAQYDLYRPFDKGTSQGAGFITHGYVEYPMVAQVNADVTVGSLIRADHMGRPVAFAATTSAAGAYPWLQVGKVVEVEQFATNFDDGLLSYMQLPSDPGALKTVYELTRAGTYSGKLGIRANLDVHNVIGAFRVNLTL