Scaffold Ga0209107_10000015

Overview

Basic Information

• Taxon OID: 3300027797
• Scaffold ID: Ga0209107_10000015
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 105059
• Total Scaffold Genes: 208
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 98 (47.12%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007265	Metagenome / Metatranscriptome	354	Y
F012341	Metagenome / Metatranscriptome	281	Y
F015080	Metagenome / Metatranscriptome	257	Y
F017641	Metagenome / Metatranscriptome	239	Y
F020907	Metagenome / Metatranscriptome	221	Y
F025022	Metagenome / Metatranscriptome	203	Y
F027828	Metagenome / Metatranscriptome	193	Y
F048940	Metagenome / Metatranscriptome	147	Y
F073557	Metagenome / Metatranscriptome	120	Y
F099268	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209107_10000015106	F073557	GGA	MTDAQICEMVNMHRYLMMCEIKHAFHKFCAENGNQDYSAANRSEAFNDKEWIKFAQWFKDIRDE
Ga0209107_1000001513	F048940	N/A	MSVAQRMERQFFLSFIDLINEVQGKQKLPSQLNSNRKSSWMKQVSNPRQKKDALALV
Ga0209107_10000015134	F020907	GGAGG	MTDEQLLNSLQGTMATIDPYSVKKEALDEYRIDTIEERLTRIEDKVDLLITQLKIEFYKKNDGTSR
Ga0209107_1000001518	F015080	N/A	MFDLLNFQPHLNGIPNAIAARHVFENDWEISVVAGPPNCGLYGNINENTYEVAIIRPNGNMTEDVNGWNSKEEVSAMMWVLSQL
Ga0209107_1000001532	F017641	N/A	MHTMLFHYTTNWKEGKVNQMWIEEIEESYDVYKYVAIAFNPEKNVSMVMSNPRGYYDTLQWVRKFCGSFCIL
Ga0209107_1000001537	F027828	GGA	MMELTTETMLDKVLMIEDILTEKQLLVLQDMLYVYKDLQEVVHNYPEPDTLFTQTQRDLFNLFDIK
Ga0209107_1000001561	F025022	N/A	MKELTVVSIKREDGLYHFNHSHQNTVEEILCNGTEEAIDEHCYFKTGKYPIEGDEVEISLFLEEPDDYDTLLVKEVSDEDGTTYTDTTLCCPVWLCNWLQGFFGEVPDEIYIKVRPINQGLEAFVKNTGMKGLLNK
Ga0209107_1000001593	F012341	N/A	MKLTIDELFDMVAKTIAEPHTIITEHDKRRAIRVFLYLDEFMMENVPEYCGDTALGEIDFGSYAAGILDELEGK
Ga0209107_1000001596	F007265	N/A	MTFQPYNIVPGTQILHSTTDCYEYTDEAEGMTYRVELQADNGGVYIKSGERGLEEGSKNITEDMSIGNKELSIVVAKRILELYGVN
Ga0209107_1000001597	F099268	N/A	MLLLDRYNEYYNDTCAGLPHGGPISMEHLQSLALKSAIYAFARKYGMKDSIPVEDLNNLADLIEAQGNEFLKRTETLMKEAHERPGGDLDAL