Scaffold Ga0209107_10000011

Overview

Basic Information

• Taxon OID: 3300027797
• Scaffold ID: Ga0209107_10000011
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 114922
• Total Scaffold Genes: 109
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (11.93%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F028489	Metagenome / Metatranscriptome	191	Y
F096923	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209107_1000001110	F028489	N/A	MIMNLIGKELKVKLTNDYSKFATLPMNRGIDSKHVQKMISSIRLMGVVRPVVTATTNVIEGEVKTYIIDGQHLATALEREGLPIPHIDIAVESEEDLIAKMACLNNSSKSWDMINYINAWKMIRPDYMKLFKWKNMYDIEITMLAAIGVNNAGIKYTTSTIKTGNFQITNPKAEEMCKAFNDIFLKIGMSDRSVKFQFLAAFLQAYGTYNHTKVMSNIEKHMKTVKLLTDGDSTGTYIRTKIFNLPK
Ga0209107_1000001112	F000716	N/A	MKKMYKMEKLKQEIRNYQLQSGKTYMQYESDGYSQYQNYLYKRALYGLNALTKEELDTMCSKKKQRILNVYKRAQKVLNVFKQQVTNQYSNYIFQTLFPKSPWTEAMVTYSEVDEKYTNTLTFKDLNIGKSDIISIFMSEGILPKNFLSLQEAPVTLPRLKNEAKA
Ga0209107_1000001119	F096923	N/A	MIMKTIAIVVLWFVFIGVLATFVSCASGHHCDAYGQTKQVETKTVSK