Scaffold Ga0209107_10000010

Overview

Basic Information

• Taxon OID: 3300027797
• Scaffold ID: Ga0209107_10000010
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 117085
• Total Scaffold Genes: 131
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (10.69%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002047	Metagenome / Metatranscriptome	599	Y
F004866	Metagenome	420	Y
F005243	Metagenome / Metatranscriptome	407	Y
F006666	Metagenome / Metatranscriptome	367	Y
F020206	Metagenome / Metatranscriptome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209107_10000010101	F005243	N/A	MAQLKTSNPLDEKEPILTKEELNARREEISAFYKDNIPHLEVQAEYEMLLATIEKSRAERLQAQMYMAQAYASQKEGGQVPVDSEEARAFKEAMENAASQID
Ga0209107_10000010103	F004866	GAG	MAIVNKVDLKLQVDINETIKYQILTYCFFENILISNSDLKCLMELSKQPKIELTKFCIFLTEQEIFKSPQSARNALAKAEKKKLIVKNGVNKKTISINKTINVQIDGLVLLDYKILGRESQEA
Ga0209107_10000010104	F006666	N/A	VNPKKHKDFKEGIADEVGVHPQVVDDFISFYFSKLRKKLSALEYPRINVDGLGTFYLRKTKLENSIKKNKSMLGNLTKRTYNGYAQSETIQSNIEQMCKALDQMEADILTKKQFKIK
Ga0209107_10000010117	F020206	N/A	MALDIKKANKTYEFSNLSVSEIVASKAVGKDILIRNYADNTAAKAAGLANGDLYHTAGALKIVYTP
Ga0209107_1000001064	F002047	N/A	MWELFQMMLKNNLTPNQVLLLFGIKQGVSLPQITNDDKLALEKLGFLILDNGKYTMSAEAKSLIVHLDNYFTKAKKKTDAQLMGQDFVDKINTYREVFPNIKLPSGRPARVNVKMLSESFRWLFETYNYTWEQIIKATKMYVNEYRDAQYMYMQTSQYFICKQDKHKVKSSTLADYCDMIRDGVETESKHFKENVI