Scaffold Ga0209107_10000005

Overview

Basic Information

• Taxon OID: 3300027797
• Scaffold ID: Ga0209107_10000005
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 130553
• Total Scaffold Genes: 150
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 111 (74.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016801	Metagenome / Metatranscriptome	244	Y
F026252	Metagenome / Metatranscriptome	198	Y
F043934	Metagenome	155	N
F051128	Metagenome / Metatranscriptome	144	N
F054848	Metagenome / Metatranscriptome	139	Y
F059636	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209107_10000005123	F026252	AGG	MSGFTALQINTEKRTIQKIDVPASVAKALREAGHDVDWRKITPGEDLSSYDVLWINLAPLNSLNGRQGAMGALYALSSGIPCVGFFDDWQFNTVFNGARALIRKPEMLYKHLLVGTEHRGEEGATYFSRADIEAALERVKELNPAAAKKCYIERYYMMDNDENIKPYEKRLVEAARDLLADRWAAGMVPVCPMYAFGDRSSVRKRMPDEVGPIEALDPTATIVPTLQPVTPLPPTSKKRAWVLGALMPHDTWLEKKNPDWPVEIVGSRKLIKKLGGQRFDTEQDVIEFYNHHWGILSPPYPHAGSGWWRSRFLYAAHVGSILVTDKGEGDPLGDAYKLKITDVEKMSDTELHEAAMAQRAALAPYIPEYSAFVEHCNRIIERAVAEDKGVKRNADGTPA
Ga0209107_10000005143	F043934	GAG	MPITSISGVDEDALSLKYLLDGVLSKTVDVFTEYNVPLPARRYWTVGTAPVDCEQVAVSFIQIYLGTPGDQAGQPLRTTSPRSAVLSIGISREVPVVGVNGRPPTGEKIQEGSEIAAVDAWVFMRLLNRLDQWEPGEFGLGVIATADVSGAEGGIQTTTMQVTMAIP
Ga0209107_10000005146	F059636	AGGA	MAFTGVFEAPMVMGANFGLLGCVKPDTNLDEDQWVRGFSQYWDSGVYSAKNWDDTDTTSYTIANNATPARYLEVKPFFVEVEDYRSTLGLLGIDHIERIKRQLECITQKALETELWDGAVRIGASHANRALVDPAATILNSGTALSARRALALLEQTIGDTSACGIQGVIHMTRDVATLVASSSLIYPSAESGDTFLRTVGGTPVVIGSGYSGAGPTDAAGDAETPTATNKWMYATGDVRVILGDIDVVNDSLAQGYDVSGNANNMLLKAIRPAAVYFDSSVHAAVRVDLTA
Ga0209107_1000000515	F016801	GGAG	VTTLAAIQGDGWSVLGCDSRASDEGGRYMDLATHKIVQNNGALIAVSGASRGGNIAQFGWKAPKPTRTENLDIFMTKKFIPSLRKAFQDAGYEGKDDGAAAEHDSNLIVSVQGVIYPIFNDYSWDREARNVYYSGSGGDIALGALEALSYRKVKTPEAAEKILRRAIEIAIQHDIYSGGEIHTFVQEE
Ga0209107_100000055	F051128	N/A	MAKAQELPQAEKELLATLHKEQLWRRVQELNEAGWSLQSIANGFIPEKRRSTIRSWVVKELPEREVITAGFPIPKPPVKKVKSRRKRVPSPGIPLDEQLRIARLSPLARRYRARTAPSSSSFTANVELTSIAGVLYSKGVTVSELARASGVTYRAMKRRVDKASQ
Ga0209107_100000059	F054848	N/A	MKRGKTMSTDTATPTKAAELYTSGKSVVEVASELGVTYGKARKLIAEAGADIRNTSDRLKGKTRKAK