NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209373_10429613

Scaffold Ga0209373_10429613


Overview

Basic Information
Taxon OID3300027796 Open in IMG/M
Scaffold IDGa0209373_10429613 Open in IMG/M
Source Dataset NameFreshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - High cellulose week 5 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)519
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater → Freshwater Pond Sediment Microbial Communities From The University Of Edinburgh, Under Environmental Carbon Perturbations

Source Dataset Sampling Location
Location NameUniversity of Edinburgh
CoordinatesLat. (o)55.9225Long. (o)-3.1724Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050059Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0209373_104296131F050059N/ASTPTTCARGTALWESLVGKPRGKDTRENHRCFDPRGGLRDTAATALEESASACPHSRRGLTPLGRLQKYPKIHVSTGEESSGSGPEFTQGLRPRHQRERNSERPPRNSHGDWPFLRPPERVPEGPVVSREHLPQLEKIQEVLPSRRDEAHFR

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