Scaffold Ga0209139_10004999

Overview

Basic Information

• Taxon OID: 3300027795
• Scaffold ID: Ga0209139_10004999
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5023
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009613	Metagenome / Metatranscriptome	315	Y
F029226	Metagenome	189	N
F045330	Metagenome / Metatranscriptome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209139_100049993	F009613	GAG	VLQSGVELLYRAIKSNIADSLDGVIQIKCRPGRRYISEVLEINSYDADGDPFDYCANYQR
Ga0209139_100049995	F045330	N/A	MRVRTVDSPRLDGCHLGARGFFLEAQQSLDFEELAHRLTAFGLRTFNEFGLGGRNSTVAGVGLSVDDFVSAVLVEYMEGKLQHQASRGDLFSLLATALRNDIIDSLRKAAHAHEESRSSLPVKRDPDPAPLSLDELPGSTIDFAGSIDEERYGERARTAFAGEPELAEVVRAVLELNLYKPREIAAELGITAAEVQNRKKRLQRQLIDHNLIERKTA
Ga0209139_100049996	F029226	GAGG	MSEQKEKDLFPQKARLAQLSDSLYGSPSELVAREARELLRRAGVDPEGLKARLYRKFDALAKQYAAAGRPVPALLKQALSDLRPGAPGSPKERALVREARAAIRSVIDHAQRMQERLARLPRVTLATAYRNKKELSERDKKLLDDLAEELLKHNNRSRPKDGR