Scaffold Ga0209972_10117951

Overview

Basic Information

• Taxon OID: 3300027793
• Scaffold ID: Ga0209972_10117951
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1310
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000376	Metagenome / Metatranscriptome	1216	Y
F002622	Metagenome / Metatranscriptome	542	Y
F068743	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209972_101179512	F068743	AGGAG	MPWEIKQNFAGCKGYAVVKQGSNELVGCHKGESSAKAQMRALYASEADAKKMKDKKKKIY
Ga0209972_101179513	F002622	GAG	MDEERDEDMQLQYYMEIGAITLEGVDESGEMIFAIHEKAKDVAPELWEAHIRYVDDSLMKLYEAGLMEVEYDENLQATLHVSPEGQKLAKQLGLIEMDLDETPNN
Ga0209972_101179515	F000376	GGA	MSIYQNKAKECKCCGKHVPLPTTLKEYSGYVLCPTTFANVVEYKRLWKSLGSRPAGSVRKHFSEYVQQIVETTIDKNEDGTIQ