Scaffold Ga0209972_10104904

Overview

Basic Information

• Taxon OID: 3300027793
• Scaffold ID: Ga0209972_10104904
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1413
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012105	Metagenome	283	N
F036604	Metagenome	169	Y
F041721	Metagenome	159	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209972_101049041	F012105	GGCGG	LAIRRHSLQDLTLGQSTLLKVPSCEERQIRRAMGVLNAERSDGLRLKTLRTPEGLRVWLVECVEVADCPEWKTGKSRRFPGRDVVAVRKSVVKLNEWARVLRRPYRFRVVVRDSVPVVLKLPKNKTIRIRREAELSRVMRAVERLRAGQGTVVRGVERCDIIRAKWRFKKRGIRFIGR
Ga0209972_101049042	F041721	GGGGG	VSDSQLESLRAFAARERGHLLEHCPPIPVVSDWFLEVDRDGRLTGQVISGACTSHVQYDPRFRAVFRHDCTFYSSGLGEWLHVVETFWRQTLRQWQSYRRLGEVLQAAEDCTPETHEQAWRAVYECLGWNPDTAREHYLERRAGR
Ga0209972_101049043	F036604	N/A	ERVAECLGRINRFGGQVPHCTVLRHSLEVYYRIYADPDASDAARLWALLHDCHEILTGDVVRPYVTARLRMDQQEIDNAIIRRLPQLVPQPDSISWREVAAADRAVGDFELMQMERDRAPYDVCGDAEDSWTSLVRELITIGGAA