Scaffold Ga0209972_10102295

Overview

Basic Information

• Taxon OID: 3300027793
• Scaffold ID: Ga0209972_10102295
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1436
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019635	Metagenome / Metatranscriptome	228	Y
F031455	Metagenome / Metatranscriptome	182	Y
F081253	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209972_101022951	F019635	N/A	VMPTIKIYIDGDTEQPTPTPTPEPPVDLQAEIDRINRALCDVLTRIAKIEGNVQGLRMRLIDQDAEGRVP
Ga0209972_101022953	F081253	N/A	MSLIQTPEQLADAIRNDPQRVAECLHRINRFGGQAVGCSVLQHSLGVYDRLAGAPANVRLWALLHDCHEILTGDVVRPYVDSWLSQQQVNIDQRVRNELRLTLSDDDATAVRRADVWRGGCEFQMVHAGRRVYHHEMPVADWVDSVRALLQEVAK
Ga0209972_101022954	F031455	AGGAGG	VRLHPTIEQHSLHKLAVGSSVLLKIPREQFTPLRRAIAFFNECTDDGTALRTKISADGITVSRREIVRIADSPDWRVGTSKPFACTDRLSLEHAVARANEAAKQLQRGYRFRVVIEDGKSHVLKTLCRCRCVIHRQEQYLRIVGMIRRMGVDCVGRVDNVELRDVRRVQRNFKHSLRFRAKQVGDNTFQIRRTR