Scaffold Ga0209972_10053587

Overview

Basic Information

• Taxon OID: 3300027793
• Scaffold ID: Ga0209972_10053587
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2187
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013892	Metagenome / Metatranscriptome	267	Y
F018349	Metagenome / Metatranscriptome	235	Y
F047643	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209972_100535871	F013892	GAGG	VGDRANFGFVQPNGETIVLYGHWAGYHMLANLAEAVAKAQPRWSDPSYATRIAISNLIGDGWSMETGWGLHVNEIGDNEHKIAIVDFTQMTFSLHEEDSFYNLDNKV
Ga0209972_100535873	F018349	AGGAGG	MDYKDGFEDGVKFTREVIIANIRAWAADCIDGSEGQIMDDVADKIEFGTLNNDL
Ga0209972_100535874	F047643	AGGA	MYYQLQAPNTAALKAAYWEAEFAGLDPYWIDSNVFDIGTGNIEKVSALISKYKLDILVESEYEPTGYRR