Scaffold Ga0209972_10035930

Overview

Basic Information

• Taxon OID: 3300027793
• Scaffold ID: Ga0209972_10035930
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2820
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay → Streptomyces phage Jay2Jay (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003689	Metagenome / Metatranscriptome	473	Y
F023361	Metagenome / Metatranscriptome	210	Y
F097194	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209972_100359301	F003689	N/A	QPEMNQFLSGKKHIIYDKIGVSYDTLWLICNEQILFTIYSTDVSEINEIRNFFIDEFRRMDESAKDVNLLPGINSNTFKFHSIYVADMSPTAPSEELQGFFSADVILEMKYSRNTDSTGRYI
Ga0209972_100359303	F023361	GAG	MAAMNKAQESTTENESLSVLIDACAIALELQLPDLVKDRDALEEALDVPTINRILEICGGIKLDDPNLIAAAVLAGQN
Ga0209972_100359304	F097194	N/A	LQTIESLQKREKDNRIFLASLQGVDIRDEQESKGPTFEDIRLRAMGIEASTDDVVSLQGQMAQEQGFGIGLGLGYSKE