Scaffold Ga0209972_10033704

Overview

Basic Information

• Taxon OID: 3300027793
• Scaffold ID: Ga0209972_10033704
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2936
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002540	Metagenome / Metatranscriptome	550	Y
F012767	Metagenome	277	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209972_100337042	F002540	AGGAGG	MSMPNYQGTADEYAKFGPMLNVWQQLQLLSQWSPLIGFGQRFVNEIDPYRKSLVVSDLAEWLASKTNAQTDDRLVQLLAEVLKTPQGENLVRFLLLQAEAAK
Ga0209972_100337044	F012767	GGAG	MAGVTATISVTAFRADWETHMPMRALCERYTITRDQVIRLRDVWHLPLRNDRRLRFKPRRCDMRDPTPREIIQACKEIQAKWDARTREERAVIKTQHVSLRRIEMTDEAREAFGQFEDE