Scaffold Ga0209972_10027832

Overview

Basic Information

• Taxon OID: 3300027793
• Scaffold ID: Ga0209972_10027832
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3319
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001019	Metagenome / Metatranscriptome	804	Y
F004666	Metagenome / Metatranscriptome	428	Y
F034924	Metagenome / Metatranscriptome	173	Y
F068492	Metagenome / Metatranscriptome	124	Y
F083783	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209972_100278322	F004666	AGGA	MTTKREYLASKGITVGRRGRFSAAAKQALAEAEQSGVKFVAESTKTPKK
Ga0209972_100278323	F034924	GAGG	LPIYRVFGRKYQDFYTIVSAADEYEAADIANARPEIDWDRVEMDDVIEATDVFLDDDTSADLQLNID
Ga0209972_100278324	F001019	AGGAGG	MSNYVASLEILEVAYEVSPGGVRTFEVYDKSEIDPVSIPIYETESLTDAVEYCYDLGRDFIVRTYAEWEMREMLADL
Ga0209972_100278326	F068492	AGGAG	VNSTYLEPRLQKLVDLGETGTDILHGELKNLMYKAEQEFLEAQSIEEENDYSDAMESMERKYWEGQCDALEHVYALTYQLAFAIQERTKKNGN
Ga0209972_100278327	F083783	AGGAGG	METEYINRKTQLVTYLQLHAQSLNEDLSQLSNKMDSLDPASKEFAELDIEYNFTSGQESATMHILEYVEEIM