Scaffold Ga0209972

Basic Information
Taxon OID	3300027793 Open in IMG/M
Scaffold ID	Ga0209972_10020427 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209972_10020427 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4070
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (81.82%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4070

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (81.82%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location Name	USA: Ohio, Lake Erie
Coordinates	Lat. (^o)	41.69957	Long. (^o)	-83.2941	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Ohio, Lake Erie

Coordinates

Lat. (^o)

41.69957

Long. (^o)

-83.2941

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000645	Metagenome / Metatranscriptome	962	Y
F005585	Metagenome / Metatranscriptome	395	Y
F005878	Metagenome / Metatranscriptome	387	Y
F099166	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209972_100204274	F099166	GGA	MTIKDLSLKLAAISLLADQAKRLKDELRAELQGEMNNLGADRVKAELGDEVIAYITTTKPKFKWVIKSDRQFIDWVKTNVPSEIVETVRESSVDKILEKFNYLDDVVIDPNGEIVDWLEGSESEPYLTTKFHGEGRAKLRDAIIGLNGANEIDVRKVLELEG
Ga0209972_100204276	F005878	N/A	MIDEIHPFTCGQCKKVTAQRGIIKYDSEITEGQDVWLMECQNCFEQRLVEPMDRVANKEDAITRCDQCGNYKMKAAKCRICKIADGQERIKERYWNGNATLERFIDADI
Ga0209972_100204277	F000645	GAG	MSNYLDDYVSVQDRLKEFINGYPDYRIKSHVLEESLIPTCDVYIVKVELYRTEADSAAWTTGLSSESKSKQYALELAETGALGRALNLAGYFAKPSGTPKKPIQTTNKALAEFVADQRPNDPEPIVWDVSHIADQFGAEVIDEVPLCGNGCGPMILKQGTKEGKEYRGWVCPIAKSGHPAKWMKIGADGHWVFQK
Ga0209972_100204278	F005585	GAGG	MATRGTIYYAFTKSRESSVFSSETHLSWQLSLSRPNSAEWWRVQSARIRISISLDTPLFWLSQDSAHQKIGTTLSLIRNTNQRQWCDYCKSRYGQLKDGTWHLKAQVPAVWKVQSETPLRRAQVRFYCQPCANEAQNWPDGTFWSLKEQLEYAIDEFAGREKLNVELPR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209972_10020427

Overview

Ecosystem & Geography

Associated Families

Sequences