NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209972_10014956

Scaffold Ga0209972_10014956


Overview

Basic Information
Taxon OID3300027793 Open in IMG/M
Scaffold IDGa0209972_10014956 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4982
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041487Metagenome / Metatranscriptome160Y
F062766Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0209972_100149565F062766N/AMTANQMADELERILDRSDSFGSPGYEDFELSSVLTMAEVLYIKKYYDEMNNRKGKGFQEIEIRDQGLGALIVDAPSLTPSASQAGIIVNSNVVGKFFDLPTDHMYTIYEECTLDKIECGTNIPIYAYVVQIAHNEMQRYNWSKYKRPFYKSYGDARVWRSEYKRNVSGINPAAPATAKRHELFTDGTFNIAQYHMRYLKNPDAIVVDRTTPANQRNAELDESTHLVIVQMAADLMMERTKDQKLQIIEPLKELE
Ga0209972_100149566F041487N/AMETAEKEKVVYGSFLLDKIVTVKPVESSGKWSTLLVAGQDRKKDPFLYNKVKRSYQVPLNAENRGGGVKVILDDQRRVKIQKYMESHPMGMTQKEFFEKELGVNLNPTLKAEENFWRNDRRGRVILTKEGISLNLNQSIDMLKYLILLANKSLISPSYEERDLKASYEFMIVEESKVTVKKLEEANLKAQAYVKFAEITSNKKNTVGFIKSLGRTIPATATEDWLKNEVLTIVDNNPEYFLEIVNHPQYNERIFVQEAVEAGAIIRKSDKRYTLDNGAELGELTDVVNYLLNPDNQEVKLRIKSKVELAKRN

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.