Scaffold Ga0209972_10005848

Overview

Basic Information

• Taxon OID: 3300027793
• Scaffold ID: Ga0209972_10005848
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8942
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (93.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026257	Metagenome	198	Y
F048282	Metagenome / Metatranscriptome	148	N
F096925	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209972_1000584814	F048282	GGAGG	MRDKKLKDYLERAKHILNLSHWEIKISTDLPPDDAWADIEVSQNLYAATIRFSHGLWKEKPEEIRRVIAHELIHCHYAGVERLVEVVQDSLGTTAGEIVSKIWDVESERGADSLSTAVAELLPLPTFGEKS
Ga0209972_100058485	F096925	GGAGG	VPRLQIRSQLDHVEKGGILDDCGPSSAACASSWVTGKDISAAQGIKAKEKATGFKEKEGVSDNGSSLWDLVKTCKELGASARYARDWSDCVDSLKKGAALIINVDAAKNYPPQAISAWHKRFVGRHKGATYGHMVAAAWCEDHGFQFADPTFTGKGKEKFAVTVTEQELKAIASSKGDAPFKRCIIVKK
Ga0209972_100058486	F026257	AGGA	VLTGCHVCRSPFVETINKKMRDGVPDIKISEWLDENAQYISRITLGNHKRKHLTEPHERLRQQAVKVMQKQAKTIKATGDLASLVRDHVHAAVEQGLMTPTLAEGLRAQEMIDRRQEKGADREVALTLAGILGGGATYAVLDAKEVKEIEG