Scaffold Ga0209972_10005553

Overview

Basic Information

• Taxon OID: 3300027793
• Scaffold ID: Ga0209972_10005553
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9244
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (81.48%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001176	Metagenome / Metatranscriptome	756	Y
F001280	Metagenome / Metatranscriptome	732	Y
F035764	Metagenome / Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209972_100055531	F035764	GGTGG	MIDKLISILFKWTGFREALFAEVNMYNSLTRIMKDPESMEIASAFWEEPDGWKGWTVEENKYYFNDIPEHDLMGVMESLEE
Ga0209972_1000555310	F001280	GGTGG	VCIECGCEAFGSETGINNIPGGILNVARDGEAGLTLNMTATPEQRERFINE
Ga0209972_100055539	F001176	GAG	MNNGTGMDTPPNNTPSGAVTSQEATRKNPSQGKFKSGFSGPRPATKIDTNKHGIRRETILGQKKTKPKKV