NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209972_10004335

Scaffold Ga0209972_10004335


Overview

Basic Information
Taxon OID3300027793 Open in IMG/M
Scaffold IDGa0209972_10004335 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10754
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029387Metagenome / Metatranscriptome188Y
F054788Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0209972_100043356F054788N/AVAVTKAQLIALTRETMDAVASDRWSDATITTVLNSVYGDEWSNILNAQPYYTFAKRTVSTDSDGMVPFSALSSGAGDNQKNFYRVLSVSDGNVLYTQTRFQDVPLATTTNYLPTYPRLFYTAGQALQILPVAASTTLYVYVNYKPTSFSQLAGDSSVIDFPDGGELVIANEAGAMLLNKGGAESTAARVLREEAALQRAAMLDDLRRYTIQPTMMAYPDQKYDWSGG
Ga0209972_100043357F029387GGAGMARPKLADQQPGMAGGLNDVSDPSALQPNQLRRAINLRLTDYGAATKRGGTQRTHSTALGSLGPTPISNGFTFQQDNGTNQILVTVSDKMYYATYGTLPWTYTIVPSATLAPNVSPDFAQFRDAGGNDVVYIADGGLLNRWNGTTLTQNIAGTAGVTVLQVHNQRLWGCGATNYPDSIFYSSLNNGDDLGNAVAPAGGGQIIVRTFGDERIVGLASVNTSLLIFHRRGISRLTGYGQDDITAAPAGVTADVGTIAAKSIVANNNVAYFISERGLYRCNESEVAAVGTPEKPDPLLPIIRQLSSADFDGIRAVMNRATKELWITIPGYGCYQYHTVLDAWSGPWDGGYTDPNTTCLFETINSSGLPVVLKGDAEGWVSLCDAPGVYKDNVLASGGGGAPYTMIAQLHRMYCGDDAEAKALRWGYVTAQLNQTTNCVVEWETNESSGSYQLPVNNAGIWDITDTWDVADVWAYAVSNNYRIPMGGTGYYIDISIVDTGQALPVISRFQLETFALGRR
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