Scaffold Ga0209972_10003668

Overview

Basic Information

• Taxon OID: 3300027793
• Scaffold ID: Ga0209972_10003668
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11954
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029721	Metagenome / Metatranscriptome	187	Y
F037190	Metagenome / Metatranscriptome	168	Y
F084246	Metagenome	112	Y
F103128	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209972_1000366812	F103128	N/A	MNSARLEFQNYYDDQAMATGALRWMVHRLEKELGNCHGVENGTCYFYWKHEDCNRLMALLADLTGNDKYLPKPTKGSSWD
Ga0209972_1000366817	F084246	N/A	MDKIEDTSCYSYKVEMIVQVFAADEESARLQLDDKGGYVTTRKVRLMDSVPIYNGVKK
Ga0209972_1000366820	F037190	AGAAG	MDRYLLIELGSDGIAFETAQFDFYASWLGIGIAIVSVVAYKIIRIKKGK
Ga0209972_1000366822	F029721	AGGA	MKTYSIEDLLVGQTYVPRSLARRFQGGEITFAEKREDIWLDGYDAYAIRYRVGQSIKQNWATVAVRVAD