Scaffold Ga0209972_10003649

Overview

Basic Information

• Taxon OID: 3300027793
• Scaffold ID: Ga0209972_10003649
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11982
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (4.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004839	Metagenome / Metatranscriptome	421	N
F010541	Metagenome / Metatranscriptome	302	Y
F014956	Metagenome / Metatranscriptome	258	Y
F021732	Metagenome / Metatranscriptome	217	Y
F025505	Metagenome / Metatranscriptome	201	N
F041648	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209972_1000364915	F014956	N/A	MNIQEFALNASLTVCPSHIVEPLHLKRWWRQRGVGELEKYFCTGKKIKYDDEINWKTISDHKKQMWYDSLNFQIQTGNEYSKR
Ga0209972_1000364916	F041648	N/A	MENIVSTFTNNSLTRYYEERIKYLEGENERLRNEARADFLTVLEFWIYAQRTIETYVMFHKEANHDHYIEMIKTILQSLEYHEEKMLDTGINKLRLEIIARCKEAILKCEKITAAR
Ga0209972_1000364917	F021732	N/A	MITKYTVKCCLDKKRNHFVHVIFSSGFGLYGANKPHHEDDNIEIHGWTFEPEDIDPECRLYPPITRFNLMPLVADNEMDWVILNN
Ga0209972_1000364919	F025505	N/A	MNNLPMIANRVEEKIQDVQLVIDNRDKRIMKIGAKEAMPKITQLLYQLLPVYGIEAKEEHLLELTEFISTYKLISVDEIRLAFEKFAKQELDINDHKLYGKVDLHAIGRILTAYINWRQKIYFAMDSDIQAKKEEEDRLNRLGKVAEEYDKDFDNKLKNFQSPYLEDIPIFWFDICVKRGYIVWEDGEKEKLWEEAKELALKIKPDSDNLIDRKNHLRKIEEGNIPRAKALAFKLAVWRKVLLRD
Ga0209972_100036494	F004839	N/A	MEKNFTNIQFKWTFESIADNIPTIMLLTIVLTYGVNAYLTAIFLPINFWVALAATSILQLGRFAVVFMDFLNPTKGRSPYPPKIALGATVIALIELFFGLQDKYSGSEFITMFFFVGTIVCFGYLLEINFVNKGVEAYGLTEPKVIKRRKRKPTVKIIKEEAPKDFKPYVTSFQTITL
Ga0209972_100036498	F010541	N/A	MEKKIFAVMYFGNAKRYQDLNYEIEAFTKREAVEKFYEKMRSEDYFPEDEFVYGGLIRDCDGNVIAEAGSDSIEYDGGYFYAEPVIQ