Scaffold Ga0209972

Basic Information
Taxon OID	3300027793 Open in IMG/M
Scaffold ID	Ga0209972_10002714 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209972_10002714 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14286
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (20.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

14286

Total Scaffold Genes

30 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (20.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location Name	USA: Ohio, Lake Erie
Coordinates	Lat. (^o)	41.69957	Long. (^o)	-83.2941	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Ohio, Lake Erie

Coordinates

Lat. (^o)

41.69957

Long. (^o)

-83.2941

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F062767	Metagenome	130	N
F067748	Metagenome	125	N
F072351	Metagenome / Metatranscriptome	121	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209972_1000271412	F072351	N/A	MSLSTANVCPAILTSLSDNLINNPANVQIMGGTLAALNDPSNLRTGQIIRQANDNGTGQSREVRVVFKQRQVASDASDTKSCEAGAQMNYIEETFQVNNYRGVSFTLSEAQLRTYCAAYAELVQLTGSTDPNQIVERANAIGAAGGALSVVREMFIDFQLSANALVQAINDDLLASIVGSVGNWYGGATNPTYAVENSSDGSVKAKGLFEMKQNYMNTGFSGAPIIVGGAGALQRVWMNDSRYFGQGANGINFATVRDNTGVAEFYFDSNIASNLTDQNSAIVFAPGSLVYTPYLQYVGSYGQIGVMNRFTMPIPGLPQVKCDVRILPDECNETYAVWMEAYFDVFAAPTTLFPAGDPNEGVNGIFKAQFTAS
Ga0209972_1000271416	F062767	N/A	MKLTKVTVESAIKDLCTNIGESFVSSGIKSYGEAVESILENSGANYVTIDGSQYCAIDDTYNLVIFLVRESASVEATPAGGRASSLLRTVNFKLVANSKISSAEFALTTLINRTKGITYQGTGYDSKAIARQYFGIQEHNFETSFFTIDFQVTERISCEVSC
Ga0209972_1000271430	F067748	N/A	MNCLTDYIGLKGCSNAEPLSGLFINDYPGMSSELLDKVATPDQVSYVGMWESVQKVAYQRIRRDIQAALFTSAEAQLDQVLFQTRKEFVQQWEQIQTVPAEAIYKGTFISIQGSKYLSLRIKQLYVYNAGSVTVNAVPFAIIQTQNAEVLYSGTYDMQPGMNYIPINQEFFSDFDKVNIMAVVDCTNLDTTYGMFSDYGWQQMDLECASRFSYLWRNGWSIFPVTAPLGYSLGDSWSQDNSQSGVYLDAQLLCSLDSFICGQKEFLTDAWANILAYHVLWQKVSSSRSNYFAQSNRDYTERAMATYLEGYTQSLAIWARQLNLRGEGLCFDCDNAGLIQQGFVRP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209972_10002714

Overview

Ecosystem & Geography

Associated Families

Sequences