Scaffold Ga0209972_10002629

Overview

Basic Information

• Taxon OID: 3300027793
• Scaffold ID: Ga0209972_10002629
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14577
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (65.22%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000545	Metagenome / Metatranscriptome	1038	Y
F000645	Metagenome / Metatranscriptome	962	Y
F002241	Metagenome / Metatranscriptome	579	Y
F004115	Metagenome / Metatranscriptome	452	Y
F004233	Metagenome	447	Y
F013317	Metagenome / Metatranscriptome	272	Y
F031093	Metagenome / Metatranscriptome	183	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209972_100026291	F013317	N/A	MIEKKKWDYLADIRARTGAKTLYINATPKGVYQFDLGAINEPEWALKRLPITTDFGNKATNQRLAGFLDIRLADLLLV
Ga0209972_1000262920	F002241	GGA	MSKPHSIRYIRQLMEWGFDKEFIAKDCGINLESLEVRLRRAKERERRNGNQGTESGTSGGQPNS
Ga0209972_1000262921	F000545	N/A	MKQDAHPFICSNCKLVTPHIELHKYDSTDIAEAPEEVWLVECQRCFMQRIIYPSDRVTAKEDDIVRCDQCGKWKMKAAKCRICRLAAGLESISERYWTGNDTRERPYNAAL
Ga0209972_1000262922	F000645	GAG	MSNYLDDYVSVQDRLKEFINAYPDYRIKTHILAESLVANCDVYIIKTELYRTEADLHPWTTGLSSESKSKQYALELAETGSLGRALNLAGYFAKTKPSPKKAIETTKPALAEFIKEQRPNDPEPIVWDVSQIANQFGAEIIDEIPLCSGGDGPMVLKTGTKEGKEYRGWVCPTPKSGHPAKWMRIGSDGHWVFQK
Ga0209972_1000262923	F004115	N/A	LQQNSQEWWKVQSARIRISISLDTPLSWVDADFLLQKIGTTLTLTRNHNQNQYCDYCKYRWGANKNGWDLRAMTPAVWKVQSETPLRKAQVRFYCQPCADEAQNWPDGTFYSLKEQLEDAINDFAGREKLNVELP
Ga0209972_100026293	F031093	N/A	MAAPELATLVASVLGSIALLIAGLRYIIKLENIPIVSRLDKMESQLELALAKGVRNGNAKARK
Ga0209972_100026297	F004233	N/A	MTLWTPDWRIKVNGTELTSVILSNLTITSGRQDINSPTPAGYCSLEVINTDGTNYSFTINTAVTVEIKDTSGNYVALFGGRVSDLRQVVRSAGSSAVITSLRITAIGALSKLQRAIFDGNLAEGLDGAQITDLLDDLLLGSWNEVPPAETWANYDATETWANAQNIGLGEIDTGEYTMVSQQITDTVIGPLANEIANSALGYLYEDANGLIGYADASHRQDYLLANGYTDLDASHAIASGIGVIQRQGDLANKIIMDYGNNFNSSYTAQDTTSQSTYGLFAEQFNSYLKNAADVEDVADRLIQLRAYPRDTFQSITFPLQSPEIDNADRDALLNIFMGQPVRITNLPLNILGGEFTGFVEGWTFNASVSGLSITFLATPTEFSAFAQQWAQVNAAESWNSVLNTLEWQDAIGVIS