Scaffold Ga0209972_10002268

Overview

Basic Information

• Taxon OID: 3300027793
• Scaffold ID: Ga0209972_10002268
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15857
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (11.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033727	Metagenome	176	Y
F039051	Metagenome / Metatranscriptome	164	Y
F056429	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209972_1000226811	F056429	N/A	MSEDLKIMGYYKNVTRDQVVQIKDFKKDKLWYETIRQYEANPITEFCCSVERFKRLYIKT
Ga0209972_1000226829	F039051	N/A	MIPVTQILDIIKKQGATGVLALWLWYTHSDVQDLKARLYDCYGKDKTSSATKEIKDTSVVAIIPKDELNEE
Ga0209972_100022688	F033727	N/A	MKQQAKVLSEANELTRLMIRHYLQKHELSLNAFSKLVEIKQPNLHKFLNGSSLSSKSIEKIGEFFSK