Scaffold Ga0209972

Basic Information
Taxon OID	3300027793 Open in IMG/M
Scaffold ID	Ga0209972_10001798 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209972_10001798 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18172
Total Scaffold Genes	46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	30 (65.22%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

18172

Total Scaffold Genes

46 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

30 (65.22%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (87.50%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location Name	USA: Ohio, Lake Erie
Coordinates	Lat. (^o)	41.69957	Long. (^o)	-83.2941	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Ohio, Lake Erie

Coordinates

Lat. (^o)

41.69957

Long. (^o)

-83.2941

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F005092	Metagenome / Metatranscriptome	412	Y
F005745	Metagenome / Metatranscriptome	391	Y
F013526	Metagenome / Metatranscriptome	270	Y
F015730	Metagenome / Metatranscriptome	252	Y
F023106	Metagenome / Metatranscriptome	211	Y
F029721	Metagenome / Metatranscriptome	187	Y
F048943	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209972_1000179819	F023106	GGAGG	MRIRRMMTEEEKVAKNIGDVVSDLRVDLERVGEYIATSQPYVVYNRIQVIAEAAKETKEGTNYARNNF
Ga0209972_1000179823	F005745	GGAG	MHTDFNPDYNLPEHLQHMIDERLPALDIIHGEMKNWMYEAQLQLEEAQRIEEANDYDDAMESMERKYWEGQCDALAAVYQLTYQLSFALDEK
Ga0209972_1000179824	F048943	GGAG	MSNYLLEYMRIHLVSIEQDQAAVSEQMEALDPNSKDYAELDFEYNWLGGQIIATRHFIQIGEEHAH
Ga0209972_1000179837	F000808	GAGG	MEYNYAITISYDGELYADFKTADMLEAVDVWNKCVDFGNAKEYATYNLSDPTGKMYTKTFYRNGKVAIK
Ga0209972_1000179839	F005092	AGGA	MDKLEYALRQIAACNFCNGRGVDYFGNGEDYDFEDCLCNPYGLILDEDGSVIFDNGLLSEPELFATMEAN
Ga0209972_1000179841	F013526	AGGA	MKKNVLISFITESDTDLGAVFDLNKVFLALPESDLVKFDVFDVLDVEENK
Ga0209972_1000179845	F029721	N/A	MRSYSIEDLLVGQFYRPTSFARKYQGGEINYATKRDDVWVGTEYQAYSIRFNGHKWATIAVRVSDL
Ga0209972_1000179846	F015730	AGG	MLTEKTLNKIVYEYQHGGVQNYHPEISLSERKALLKYLWSLPSKCAPECEANHTA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209972_10001798

Overview

Ecosystem & Geography

Associated Families

Sequences