Scaffold Ga0209972

Basic Information
Taxon OID	3300027793 Open in IMG/M
Scaffold ID	Ga0209972_10001233 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209972_10001233 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	22748
Total Scaffold Genes	39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (33.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

22748

Total Scaffold Genes

39 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (33.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location Name	USA: Ohio, Lake Erie
Coordinates	Lat. (^o)	41.69957	Long. (^o)	-83.2941	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Ohio, Lake Erie

Coordinates

Lat. (^o)

41.69957

Long. (^o)

-83.2941

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004723	Metagenome / Metatranscriptome	426	Y
F010317	Metagenome / Metatranscriptome	305	Y
F027823	Metagenome / Metatranscriptome	193	Y
F030085	Metagenome	186	N
F038644	Metagenome / Metatranscriptome	165	Y
F073452	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209972_1000123314	F027823	GAG	MNVTAVINVPNVEQTSIWKGYFEAHFMSGKEIDVKYPILNNKWKYSHTKYPTDNIIYDGYYYAYEKDIGIGIMIDPWFREFKTHIAIIDSHYGFKRFMGYHTTVEGNSVLLKIYKIN
Ga0209972_1000123315	F038644	N/A	MSFVKISQLPDGPWREYALEAQRRGIEKIGDCQLRGTDVILIGAIDMIRELTERLTKLETKKDKEGV
Ga0209972_1000123316	F010317	N/A	MSKLIYIEKLAEVKGGLPARSMDEHIMGESNNNGEFSIPIEYNVEGYLLYEIEVGKNVFIDRIKRNGVEVRGVFTTSRVTEVGDKYFKTQNSVYQYKFL
Ga0209972_100012332	F004723	GGA	MKEGDKFIHTDRFGNKHELTYSGTRREIKGCEFEFFYETGKEGCCFFTDSEVAKMEKI
Ga0209972_1000123320	F030085	N/A	MIKLTHLFLEQLLSEINTNTPLYHRSVRKMNVGDAIEIPKEPRSGKHYLASKMGELALEQERKEIAPNAPSRLNCVYSSLIPRSRFVDKGYLYRVKPTGKIFVADSTLIDTIMERFDREYYDYISRYDQPERKEIEQELLQNPSKLTNYLPSEAYYYWQGEKPNIAAFGKAALRDIEVLSDGAIVTEVVSENEKSTPFVMGDDVVVTESDKLRANLTLYINSTTVAKDEKGKPNYTPEEIDSLLNYIGNNIFDGVKAEPSKYTENSYDFLGNLKKGAKLKIISLASNIRGGRSAYNIAAGKYETIMFDFYVDGKLISRNMKNNDKNITHRFTLSRWNNEKVRDYSKYLKKI
Ga0209972_1000123323	F073452	N/A	VEFLLYISMRRIVTKDKKTGKKKLVNVPSWDQIIVNNQFGQPAYDVGISSTSGSLAS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209972_10001233

Overview

Ecosystem & Geography

Associated Families

Sequences