Scaffold Ga0209972_10001199

Overview

Basic Information

• Taxon OID: 3300027793
• Scaffold ID: Ga0209972_10001199
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23171
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (21.43%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001640	Metagenome / Metatranscriptome	659	Y
F003786	Metagenome / Metatranscriptome	468	N
F008078	Metagenome / Metatranscriptome	339	Y
F009808	Metagenome	312	N
F049620	Metagenome / Metatranscriptome	146	N
F092040	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209972_100011991	F001640	N/A	YIVTMTTFSDSTVTGNKQILGDSLKAINALVTDAERQSNTIAIHAKPLILKGKTVKRINYYNNLHLQISGKPVYTSTALRDTTAFLGDWTLVFNGENILGEIQLNNANRFIFNPDNGKVYSISTNLLLSTFTNQISFAFNGVRYDLYKFANGKFATVDNEVRLIKKE
Ga0209972_1000119919	F049620	N/A	MTPEERDEKIVSILTKICINILVKNLFDKNGVKVYEDVLHELNQLPVNEEDYTRCNHAHAFLHKTAIEYLQKTIKFNEEYRAK
Ga0209972_1000119920	F003786	GGA	MNLTKYQPHNQDEQAIIESRPNRIANIEPKDAFRNVLNVISSLFPLHGIDGDLTFYSTVTKEIVKTFGQIAANEIEIAFRLFAAQSLDLDDDVKFYGKANMHTIGKILNAYLIYRRKIIAAHDNEVAALRHNANMEEKARKTREELYANFPTMLKEFKGKDFSTVPLYWYDMCVQFNMIEYEEGEKRALWEEAQALALKEPPESMDLMTIRSHAKKIEQGNTRRAVVIAQQLAVWRKVLK
Ga0209972_1000119922	F008078	N/A	MTPKEKAEELFNYYHNLIQDIGGELGQEILVSILARHCALFAVNTLLKDKHPTEDFNETYYYWEEVEHEIENYEE
Ga0209972_100011997	F009808	N/A	MKKNFNNQNFEWLFDDITSTMPKIIFVGIILTYAITAALNVYFLPLPLLLSIPASLMLQFGRFAIVFIDFLNPSSKRSVYPPKVAAIATVVALLELFFSIQGQATGAEFYAMFFFIGTIICFGYVLEIQFIEKGIEAYGIGMKAPRKRNVPSKGKEPVQMNTTVRSVQLSLAIMLVLGVTTVNAQNNHFLAYNTVGFEKIGNKLLERSYYSEADNTYTVDTITYDMLSGIDLWDGYSRTTYDNCLFMTYGTLNLEYFPLMGLWKHDKKYYDYHSLLKFVSKYVKRNFLNKKINYDEIRRHRSSHAAKRLGSMRD
Ga0209972_100011998	F092040	N/A	MEVEMNKYVIKFEDGRSVTVTARNLEDALEEFKLLRIETATKEIRVMTAWERYNKHKQKE