Scaffold Ga0209972_10000952

Overview

Basic Information

• Taxon OID: 3300027793
• Scaffold ID: Ga0209972_10000952
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27142
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (17.14%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024717	Metagenome	204	Y
F025680	Metagenome	200	N
F034061	Metagenome	175	N
F070850	Metagenome	122	Y
F079784	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209972_1000095210	F025680	N/A	MKFTKQLKERARSIFRSKQKSEYNLVKVFEHEGHTYYRFPKELNLPLERFSMSMGLLERLSCGLSGTEMELILEGMEKALSAGLSNAKNAALVAAYIHIIRERQDTVIHRDILLNIAATWIVRDDENPAAINIDTHEQKLQVFEKLSKGGAKDFFYSLGIDPLMPLFTMSAADFQTLWEYNLIAQRKLKESIFRLNTHRDTERRKQQTT
Ga0209972_1000095216	F070850	N/A	MTHLLAYSTNPIQSITPSTGVVLLAFGKVQYYWAAYNLAFSIKKFNPSISIALIVDDKGKAISQCNELADLIDVFADIAQEDIYTNKKLDPGKLKVKLYDYLPYERNLYLDVDAVALKDIQPMIEELAQSGKDYISHCVGYHTIDKGRDFKEMQWAWADKMWKHFELDADTVMPAINSSMQWIVKGKKAKAIYTTAQDLYLNNPIELKDLRMKWGGSQPDELYMNVALAIHNVDPALKQYEKIKTSEGGMIHFAMTRGLTFQEITQHYYLQSYYGGAGFTPNFYIDWLDRMLKADHQAIGKRHIYLIHRITQNKFADAKR
Ga0209972_1000095229	F034061	N/A	MCYDKLLGLKGCDRPEPTTGLYIDDLGINQTLLGQLITNQYMSGVELFDAKLAFAWRKMSSDMLSRLSPMMKADTVIDSKRIGQVLTNASNLDLALGAGKYAGIRVTIDPNQLSFLNFYLSSLKIDIYTMATPVPILVFDMQTLKLVGTFNYQSEAVEEFIGRTYKANRRKLDLAFVYESLYDTTKMITKKGSCYDCGGGVRAAHICPFVDAIGIELTTDGTDVLTSKNKKYTQGMSMVYNVNCDREAWLCSIGGLMAMPLAYATAVEIYDYSLTIAPTIRVNTTVSVTRETIIEARDIAATRYNEELAAMLQNMRLPDDNNCFDCRKNMKYVTALP
Ga0209972_1000095230	F024717	N/A	MATPKQISERIDALFAEWSGGFTPLFFAVLDMKRLMDIRIFGIGTSGGSNTAGQKLPTKPYTPAYALIKQKNGRPPLELTGFLRRSFGKDKDSVFNQGFGSAIFIAADEAGKAEGLQYGNGKGFKGYGPIFQPTDEEQNKMLELHAELLAEQIANNLSKP
Ga0209972_1000095235	F079784	N/A	MRRKISKSRRALDIIVKYWRSTIGSLVVLASVFALIFKAISTETLAAIVAAMIAAGYIPKAKEDDN